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Tools
Sequence Analysis BLAST - Compare a given sequence to known sequences using the Basic Local Alignment Search Tool, NCBI BLAST v. 2.2.9 [May-01-2004] Alignment Analyzer - Calculate alignments using Muscle v3.6, or view existing alignments using our navigator. Mapping CAPS Designer - Designs CAPS (Cleaved Amplified Polymorphic Sequence) assays for up to twelve sequences. Two types of nucleotide inputs are accepted: fasta sequences and clustal aligment. It generates a list of polymorphic enzymes that cut the sequences into different length products. solQTL: QTL Mapping - A web interface for uploading raw QTL data, on-the-fly QTL mapping, linking predicted QTLs to relevant genetic and genomic data in SGN, and search interface for QTLs. Molecular Biology Systems Biology Breeder Tools Bulk Query FTP Site - FTP (File Transfer Protocol) is more efficient than HTTP (HyperText Transfer Protocol) for transferring large files. Many of our larger archive files are accessible here. Clones, Arrays, Unigenes and BACs - Rather than sifting through SGN page by page, here you can download large quantities of information in a single step.
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Working
