CASSbase

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CASSBASE

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- Expression Atlas
- Mesculenta Cyc
- Accession Usage
- Graphical Filtering
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- Population Structure
- Compare Trials
- Sequence Analysis
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Genotyping Protocol Search

Protocol	Marker Type	Header Description	Number of Markers	Protocol Description	Reference Genome	Species Name	Sample Type	Create Date

Filter Protocols by Accessions

Starting with a list of Accessions, this tool will identify the genotyping protocols that contain the highest number of your accessions.

Filter Protocols by Accessions:

Best Genotyping Protocols

Accession Usage Details

Accession

Copy Results to a List

Your Lists

Public Lists

List Contents

List Validation Report: Failed

Elements not found:

Optional: Add Missing Accessions to A List

Mismatched case

Click the Adjust Case button to align the case in the list with what is in the database.

Multiple mismatched case

Items listed here have mulitple case mismatches and must be fixed manually. If accessions need to be merged, contact the database directly.

List elements matching a synonym

Multiple synonym matches

Multiple synonym matches have to be resolved manually. Contact database administrators if necessary.

Fuzzy Search Results

Synonym Search Results

Create a New List from Unique Names:

Available Seedlots

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Create a New List from Selected Seedlots:

Manage Seedlots

List Comparison

Download column:

Your Datasets

Public Datasets

Dataset Contents

Dataset Validation Failed

Elements not found:

Your Calendar

Having trouble viewing events on the calendar?
Are you associated with the breeding program you are interested in viewing?

Calendar Permissions

Add New Event

Project:

Event Type:

Start:

End:

Description:

Web URL:

http://www.

Event Info

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

Edit Event

Project:

Event Type:

Start:

End:

Description:

Web URL:

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Working

Progress

CASSbase is located at the Boyce Thompson Institute for Plant Research.