CASSbase

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CASSBASE

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- Expression Atlas
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Advanced

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Search

EST Search

Select an EST sequence at random

EST Identifier

Enter your sequence identifier and select the identifier type, or 'automatic'.

Identifier Type

Example

SGN EST Identifier (SGN-E#)

SGN-E143721

SGN cDNA Clone Identifier (SGN-C#)

SGN-C157205

SGN Chromatogram/Trace Identifer (SGN-T#)

SGN-T123401

SGN/TMD/CGEP Microarray Spot Identifier

1-1-1.1.1.2

cDNA Clone Name (Library/Plate/Well location)

cLED-1-A1

Sequencing Facility Identifier

Hint: Try the automatic setting if your identifier type is not listed. Genbank identifiers (gi#), accessions, and dbEST numbers may be used in this way. SGN may return more recent versions of EST sequences than those recorded by Genbank.

Your Lists

Public Lists

List Contents

List Validation Report: Failed

Elements not found:

Optional: Add Missing Accessions to A List

Mismatched case

Click the Adjust Case button to align the case in the list with what is in the database.

Multiple mismatched case

Items listed here have mulitple case mismatches and must be fixed manually. If accessions need to be merged, contact the database directly.

List elements matching a synonym

Multiple synonym matches

Multiple synonym matches have to be resolved manually. Contact database administrators if necessary.

Fuzzy Search Results

Synonym Search Results

Create a New List from Unique Names:

Available Seedlots

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Create a New List from Selected Seedlots:

Manage Seedlots

Your Datasets

Public Datasets

Dataset Contents

Dataset Validation Failed

Elements not found:

Your Calendar

Having trouble viewing events on the calendar?
Are you associated with the breeding program you are interested in viewing?

Calendar Permissions

Add New Event

Project:

Event Type:

Start:

End:

Description:

Web URL:

http://www.

Event Info

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

Edit Event

Project:

Event Type:

Start:

End:

Description:

Web URL:

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Working

Progress

CASSbase is located at the Boyce Thompson Institute for Plant Research.